J4_6PPF_009

3D structure

PDB id

6PPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 45SRbgA ribosomal particle class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAAG*CGCAG*CGAG*CGCAUGAG

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6PPF_009 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.444

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

6PPF|1|A|C|645
6PPF|1|A|A|646
6PPF|1|A|A|647
6PPF|1|A|G|648
*
6PPF|1|A|C|670
6PPF|1|A|G|671
6PPF|1|A|C|672
6PPF|1|A|A|673
6PPF|1|A|G|674
*
6PPF|1|A|C|681
6PPF|1|A|G|682
6PPF|1|A|A|683
6PPF|1|A|G|684
*
6PPF|1|A|C|696
6PPF|1|A|G|697
6PPF|1|A|C|698
6PPF|1|A|A|699
6PPF|1|A|U|700
6PPF|1|A|G|701
6PPF|1|A|A|702
6PPF|1|A|G|703

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain L

50S ribosomal protein L15