J4_6Q8Y_010
3D structure
- PDB id
- 6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUAAG*UUGAU*ACC*GUG
- Length
- 16 nucleotides
- Bulged bases
- 6Q8Y|1|BQ|A|2657
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6Q8Y_010 not in the Motif Atlas
- Homologous match to J4_8C3A_008
- Geometric discrepancy: 0.0805
- The information below is about J4_8C3A_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6Q8Y|1|BQ|C|2654
6Q8Y|1|BQ|U|2655
6Q8Y|1|BQ|A|2656
6Q8Y|1|BQ|A|2657
6Q8Y|1|BQ|G|2658
*
6Q8Y|1|BQ|U|2712
6Q8Y|1|BQ|U|2713
6Q8Y|1|BQ|G|2714
6Q8Y|1|BQ|A|2715
6Q8Y|1|BQ|U|2716
*
6Q8Y|1|BQ|A|2740
6Q8Y|1|BQ|C|2741
6Q8Y|1|BQ|C|2742
*
6Q8Y|1|BQ|G|2751
6Q8Y|1|BQ|U|2752
6Q8Y|1|BQ|G|2753
Current chains
- Chain BQ
- 25S ribosomal RNA
Nearby chains
- Chain AP
- 60S ribosomal protein L42-A
- Chain AV
- 60S ribosomal protein L29
- Chain BI
- 60S ribosomal protein L5
- Chain BJ
- 60S ribosomal protein L21-A
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