J4_6Q9A_009
3D structure
- PDB id
- 6Q9A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound past E site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CU(2MG)C*GCG*CCUAAGGUAG*CGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 6Q9A|1|1|U|1971
- QA status
- Modified nucleotides: 2MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6Q9A|1|1|C|1833
6Q9A|1|1|U|1834
6Q9A|1|1|2MG|1835
6Q9A|1|1|C|1836
*
6Q9A|1|1|G|1904
6Q9A|1|1|C|1905
6Q9A|1|1|G|1906
*
6Q9A|1|1|C|1924
6Q9A|1|1|C|1925
6Q9A|1|1|U|1926
6Q9A|1|1|A|1927
6Q9A|1|1|A|1928
6Q9A|1|1|G|1929
6Q9A|1|1|G|1930
6Q9A|1|1|U|1931
6Q9A|1|1|A|1932
6Q9A|1|1|G|1933
*
6Q9A|1|1|C|1967
6Q9A|1|1|G|1968
6Q9A|1|1|A|1969
6Q9A|1|1|A|1970
6Q9A|1|1|U|1971
6Q9A|1|1|G|1972
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain 7
- Transfer RNA; tRNA
- Chain B
- 50S ribosomal protein L2
Coloring options: