J4_6Q9A_014
3D structure
- PDB id
- 6Q9A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound past E site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GCG*CGAAAG*CCGUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 6Q9A|1|2|C|576, 6Q9A|1|2|A|815, 6Q9A|1|2|C|817, 6Q9A|1|2|A|819
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6Q9A_014 not in the Motif Atlas
- Homologous match to J4_5J7L_003
- Geometric discrepancy: 0.0942
- The information below is about J4_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
6Q9A|1|2|G|575
6Q9A|1|2|C|576
6Q9A|1|2|G|577
*
6Q9A|1|2|C|764
6Q9A|1|2|G|765
6Q9A|1|2|A|766
6Q9A|1|2|A|767
6Q9A|1|2|A|768
6Q9A|1|2|G|769
*
6Q9A|1|2|C|810
6Q9A|1|2|C|811
6Q9A|1|2|G|812
6Q9A|1|2|U|813
6Q9A|1|2|A|814
6Q9A|1|2|A|815
6Q9A|1|2|A|816
6Q9A|1|2|C|817
6Q9A|1|2|G|818
6Q9A|1|2|A|819
6Q9A|1|2|U|820
6Q9A|1|2|G|821
*
6Q9A|1|2|C|879
6Q9A|1|2|C|880
Current chains
- Chain 2
- 16S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain m
- 30S ribosomal protein S8
- Chain p
- 30S ribosomal protein S11
- Chain q
- 30S ribosomal protein S12
- Chain t
- 30S ribosomal protein S15
- Chain v
- 30S ribosomal protein S17
- Chain z
- 30S ribosomal protein S21
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