J4_6QIK_008

3D structure

PDB id

6QIK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUAAG*UUG*CC*GUG

Length

13 nucleotides

Bulged bases

6QIK|1|A|A|2657

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6QIK|1|A|C|2654
6QIK|1|A|U|2655
6QIK|1|A|A|2656
6QIK|1|A|A|2657
6QIK|1|A|G|2658
*
6QIK|1|A|U|2712
6QIK|1|A|U|2713
6QIK|1|A|G|2714
*
6QIK|1|A|C|2741
6QIK|1|A|C|2742
*
6QIK|1|A|G|2751
6QIK|1|A|U|2752
6QIK|1|A|G|2753

Current chains

Chain A

25S ribosomal RNA

Nearby chains

Chain P

60S ribosomal protein L5

Chain T

60S ribosomal protein L21-A

Chain l

60S ribosomal protein L42-A

Chain w

60S ribosomal export protein NMD3