J4_6QNQ_006

3D structure

PDB id

6QNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome initiation complex (IC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGAUAAA*UC*GCGC*GG

Length

15 nucleotides

Bulged bases

6QNQ|1|14|G|1271, 6QNQ|1|14|A|1272, 6QNQ|1|14|U|1273, 6QNQ|1|14|A|1274, 6QNQ|1|14|C|1646, 6QNQ|1|14|G|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6QNQ_006 not in the Motif Atlas

Homologous match to J4_9DFE_003

Geometric discrepancy: 0.099

The information below is about J4_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

6QNQ|1|14|C|1270
6QNQ|1|14|G|1271
6QNQ|1|14|A|1272
6QNQ|1|14|U|1273
6QNQ|1|14|A|1274
6QNQ|1|14|A|1275
6QNQ|1|14|A|1276
*
6QNQ|1|14|U|1294
6QNQ|1|14|C|1295
*
6QNQ|1|14|G|1645
6QNQ|1|14|C|1646
6QNQ|1|14|G|1647
6QNQ|1|14|C|1648
*
6QNQ|1|14|G|2009
6QNQ|1|14|G|2010

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 55

50S ribosomal protein L17

Chain A5

50S ribosomal protein L22

Chain J5

50S ribosomal protein L32