J4_6QNQ_019
3D structure
- PDB id
- 6QNQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome initiation complex (IC) with experimentally assigned potassium ions
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- CGAAG*CGCC*GAG*CGUAG
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6QNQ_019 not in the Motif Atlas
- Homologous match to J4_9DFE_002
- Geometric discrepancy: 0.1009
- The information below is about J4_9DFE_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_71729.5
- Basepair signature
- cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
6QNQ|1|1H|C|297
6QNQ|1|1H|G|298
6QNQ|1|1H|A|299
6QNQ|1|1H|A|300
6QNQ|1|1H|G|301
*
6QNQ|1|1H|C|316
6QNQ|1|1H|G|317
6QNQ|1|1H|C|318
6QNQ|1|1H|C|319
*
6QNQ|1|1H|G|323
6QNQ|1|1H|A|324
6QNQ|1|1H|G|325
*
6QNQ|1|1H|C|337
6QNQ|1|1H|G|338
6QNQ|1|1H|U|339
6QNQ|1|1H|A|340
6QNQ|1|1H|G|341
Current chains
- Chain 1H
- 23S ribosomal RNA
Nearby chains
- Chain 31
- 50S ribosomal protein L4
- Chain G8
- 50S ribosomal protein L24
Coloring options: