J4_6QNQ_021

3D structure

PDB id

6QNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome initiation complex (IC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGUUC*GGUUAG*CU*ACCCGUAC

Length

21 nucleotides

Bulged bases

6QNQ|1|1H|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6QNQ_021 not in the Motif Atlas

Homologous match to J4_9DFE_004

Geometric discrepancy: 0.081

The information below is about J4_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6QNQ|1|1H|G|1310
6QNQ|1|1H|G|1311
6QNQ|1|1H|U|1312
6QNQ|1|1H|U|1313
6QNQ|1|1H|C|1314
*
6QNQ|1|1H|G|1338
6QNQ|1|1H|G|1339
6QNQ|1|1H|U|1340
6QNQ|1|1H|U|1341
6QNQ|1|1H|A|1342
6QNQ|1|1H|G|1343
*
6QNQ|1|1H|C|1404
6QNQ|1|1H|U|1405
*
6QNQ|1|1H|A|1597
6QNQ|1|1H|C|1598
6QNQ|1|1H|C|1599
6QNQ|1|1H|C|1600
6QNQ|1|1H|G|1601
6QNQ|1|1H|U|1602
6QNQ|1|1H|A|1603
6QNQ|1|1H|C|1604

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain F8

50S ribosomal protein L23

Chain P8

50S ribosomal protein L34