J4_6QNQ_028

3D structure

PDB id

6QNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome initiation complex (IC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GUGG*CGUC*GAAGGUCG*CC

Length

18 nucleotides

Bulged bases

6QNQ|1|1K|U|8, 6QNQ|1|1K|U|48, 6QNQ|1|1K|C|49

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6QNQ_028 not in the Motif Atlas

Homologous match to J4_4RDX_001

Geometric discrepancy: 0.4532

The information below is about J4_4RDX_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6QNQ|1|1K|G|7
6QNQ|1|1K|U|8
6QNQ|1|1K|G|9
6QNQ|1|1K|G|10
*
6QNQ|1|1K|C|26
6QNQ|1|1K|G|27
6QNQ|1|1K|U|28
6QNQ|1|1K|C|29
*
6QNQ|1|1K|G|43
6QNQ|1|1K|A|44
6QNQ|1|1K|A|45
6QNQ|1|1K|G|46
6QNQ|1|1K|G|47
6QNQ|1|1K|U|48
6QNQ|1|1K|C|49
6QNQ|1|1K|G|50
*
6QNQ|1|1K|C|66
6QNQ|1|1K|C|67

Current chains

Chain 1K

E. coli tRNAfMet

Nearby chains

Chain 13

Small subunit ribosomal RNA; SSU rRNA

Chain 1H

Large subunit ribosomal RNA; LSU rRNA

Chain AI

30S ribosomal protein S19