J4_6QNQ_033

3D structure

PDB id

6QNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome initiation complex (IC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGUGGA*UACAAUG*CCCAGUUCGGAUU*AUGAAGCCGGAAUC

Length

40 nucleotides

Bulged bases

6QNQ|1|1G|U|1240, 6QNQ|1|1G|U|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6QNQ|1|1G|G|941
6QNQ|1|1G|G|942
6QNQ|1|1G|U|943
6QNQ|1|1G|G|944
6QNQ|1|1G|G|945
6QNQ|1|1G|A|946
*
6QNQ|1|1G|U|1235
6QNQ|1|1G|A|1236
6QNQ|1|1G|C|1237
6QNQ|1|1G|A|1238
6QNQ|1|1G|A|1239
6QNQ|1|1G|U|1240
6QNQ|1|1G|G|1241
*
6QNQ|1|1G|C|1296
6QNQ|1|1G|C|1297
6QNQ|1|1G|C|1298
6QNQ|1|1G|A|1299
6QNQ|1|1G|G|1300
6QNQ|1|1G|U|1301
6QNQ|1|1G|U|1302
6QNQ|1|1G|C|1303
6QNQ|1|1G|G|1304
6QNQ|1|1G|G|1305
6QNQ|1|1G|A|1306
6QNQ|1|1G|U|1307
6QNQ|1|1G|U|1308
*
6QNQ|1|1G|A|1329
6QNQ|1|1G|U|1330
6QNQ|1|1G|G|1331
6QNQ|1|1G|A|1332
6QNQ|1|1G|A|1333
6QNQ|1|1G|G|1334
6QNQ|1|1G|C|1335
6QNQ|1|1G|C|1336
6QNQ|1|1G|G|1337
6QNQ|1|1G|G|1338
6QNQ|1|1G|A|1339
6QNQ|1|1G|A|1340
6QNQ|1|1G|U|1341
6QNQ|1|1G|C|1342

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 1B

30S ribosomal protein Thx

Chain 2L

Transfer RNA; tRNA

Chain 3L

Transfer RNA; tRNA

Chain 4A

30S ribosomal protein S13

Chain 62

30S ribosomal protein S7

Chain 82

30S ribosomal protein S9