J4_6QUL_002

3D structure

PDB id

6QUL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a bacterial 50S ribosomal subunit in complex with the novel quinoxolidinone antibiotic cadazolid

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6QUL_002 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0734

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

6QUL|1|A|G|297
6QUL|1|A|G|298
6QUL|1|A|A|299
6QUL|1|A|A|300
6QUL|1|A|G|301
*
6QUL|1|A|C|316
6QUL|1|A|G|317
6QUL|1|A|C|318
6QUL|1|A|G|319
*
6QUL|1|A|C|323
6QUL|1|A|A|324
6QUL|1|A|G|325
*
6QUL|1|A|C|337
6QUL|1|A|G|338
6QUL|1|A|U|339
6QUL|1|A|A|340
6QUL|1|A|C|341

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain V

50S ribosomal protein L24