3D structure

PDB id
6QUL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a bacterial 50S ribosomal subunit in complex with the novel quinoxolidinone antibiotic cadazolid
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
GGUUC*GGUGAG*CU*AAUCGUAC
Length
21 nucleotides
Bulged bases
6QUL|1|A|G|1341
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6QUL_005 not in the Motif Atlas
Homologous match to J4_5J7L_022
Geometric discrepancy: 0.0687
The information below is about J4_5J7L_022
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_69051.6
Basepair signature
cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
Number of instances in this motif group
7

Unit IDs

6QUL|1|A|G|1310
6QUL|1|A|G|1311
6QUL|1|A|U|1312
6QUL|1|A|U|1313
6QUL|1|A|C|1314
*
6QUL|1|A|G|1338
6QUL|1|A|G|1339
6QUL|1|A|U|1340
6QUL|1|A|G|1341
6QUL|1|A|A|1342
6QUL|1|A|G|1343
*
6QUL|1|A|C|1404
6QUL|1|A|U|1405
*
6QUL|1|A|A|1597
6QUL|1|A|A|1598
6QUL|1|A|U|1599
6QUL|1|A|C|1600
6QUL|1|A|G|1601
6QUL|1|A|U|1602
6QUL|1|A|A|1603
6QUL|1|A|C|1604

Current chains

Chain A
23S rRNA

Nearby chains

Chain U
50S ribosomal protein L23
Chain d
50S ribosomal protein L34

Coloring options:


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