J4_6QUL_009

3D structure

PDB id

6QUL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a bacterial 50S ribosomal subunit in complex with the novel quinoxolidinone antibiotic cadazolid

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

6QUL|1|A|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6QUL_009 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.0972

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

6QUL|1|A|C|1833
6QUL|1|A|U|1834
6QUL|1|A|G|1835
*
6QUL|1|A|C|1905
6QUL|1|A|G|1906
*
6QUL|1|A|C|1924
6QUL|1|A|C|1925
6QUL|1|A|U|1926
6QUL|1|A|A|1927
6QUL|1|A|A|1928
6QUL|1|A|G|1929
6QUL|1|A|G|1930
6QUL|1|A|U|1931
6QUL|1|A|A|1932
6QUL|1|A|G|1933
*
6QUL|1|A|C|1967
6QUL|1|A|G|1968
6QUL|1|A|A|1969
6QUL|1|A|A|1970
6QUL|1|A|U|1971
6QUL|1|A|G|1972

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2