J4_6QZP_002

3D structure

PDB id

6QZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

6QZP|1|L5|A|218, 6QZP|1|L5|G|219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6QZP|1|L5|C|196
6QZP|1|L5|A|197
6QZP|1|L5|A|198
6QZP|1|L5|G|199
*
6QZP|1|L5|C|215
6QZP|1|L5|C|216
6QZP|1|L5|C|217
6QZP|1|L5|A|218
6QZP|1|L5|G|219
6QZP|1|L5|C|220
6QZP|1|L5|C|221
6QZP|1|L5|C|222
*
6QZP|1|L5|G|226
6QZP|1|L5|A|227
6QZP|1|L5|C|228
*
6QZP|1|L5|G|240
6QZP|1|L5|G|241
6QZP|1|L5|U|242
6QZP|1|L5|A|243
6QZP|1|L5|G|244

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LY

60S ribosomal protein L26