J4_6QZP_009

3D structure

PDB id

6QZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

6QZP|1|L5|U|3818

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6QZP_009 not in the Motif Atlas

Homologous match to J4_8C3A_007

Geometric discrepancy: 0.1142

The information below is about J4_8C3A_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6QZP|1|L5|C|3696
6QZP|1|L5|U|3697
6QZP|1|L5|G|3698
*
6QZP|1|L5|C|3752
6QZP|1|L5|G|3753
*
6QZP|1|L5|C|3771
6QZP|1|L5|U|3772
6QZP|1|L5|U|3773
6QZP|1|L5|A|3774
6QZP|1|L5|A|3775
6QZP|1|L5|G|3776
6QZP|1|L5|G|3777
6QZP|1|L5|U|3778
6QZP|1|L5|A|3779
6QZP|1|L5|G|3780
*
6QZP|1|L5|U|3814
6QZP|1|L5|G|3815
6QZP|1|L5|A|3816
6QZP|1|L5|A|3817
6QZP|1|L5|U|3818
6QZP|1|L5|G|3819

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Ln

60S ribosomal protein L41

Chain S2

Small subunit ribosomal RNA; SSU rRNA