J4_6R5Q_013
3D structure
- PDB id
- 6R5Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex (post-state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CAUUAAAUC*GCC*GUGAC*GG
- Length
- 19 nucleotides
- Bulged bases
- 6R5Q|1|K|G|407
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6R5Q_013 not in the Motif Atlas
- Homologous match to J4_8C3A_021
- Geometric discrepancy: 0.2225
- The information below is about J4_8C3A_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_78231.1
- Basepair signature
- cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-F-F-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
6R5Q|1|K|C|98
6R5Q|1|K|A|99
6R5Q|1|K|U|100
6R5Q|1|K|U|101
6R5Q|1|K|A|102
6R5Q|1|K|A|103
6R5Q|1|K|A|104
6R5Q|1|K|U|105
6R5Q|1|K|C|106
*
6R5Q|1|K|G|355
6R5Q|1|K|C|356
6R5Q|1|K|C|357
*
6R5Q|1|K|G|405
6R5Q|1|K|U|406
6R5Q|1|K|G|407
6R5Q|1|K|A|408
6R5Q|1|K|C|409
*
6R5Q|1|K|G|431
6R5Q|1|K|G|432
Current chains
- Chain K
- 18S ribosomal RNA
Nearby chains
- Chain CC
- 40S ribosomal protein S8
- Chain EE
- Ribosomal protein S11
- Chain VV
- Ribosomal protein S23
- Chain x
- 40S ribosomal protein S4
Coloring options: