J4_6R6G_002

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AUAG*CAU*AGGGUCC*GU

Length

16 nucleotides

Bulged bases

6R6G|1|3|U|8, 6R6G|1|3|U|47, 6R6G|1|3|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6R6G_002 not in the Motif Atlas

Homologous match to J4_5AXM_001

Geometric discrepancy: 0.1747

The information below is about J4_5AXM_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_70449.28

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

55

Unit IDs

6R6G|1|3|A|7
6R6G|1|3|U|8
6R6G|1|3|A|9
6R6G|1|3|G|10
*
6R6G|1|3|C|25
6R6G|1|3|A|26
6R6G|1|3|U|27
*
6R6G|1|3|A|43
6R6G|1|3|G|44
6R6G|1|3|G|45
6R6G|1|3|G|46
6R6G|1|3|U|47
6R6G|1|3|C|48
6R6G|1|3|C|49
*
6R6G|1|3|G|65
6R6G|1|3|U|66

Current chains

Chain 3

E-tRNA

Nearby chains

Chain MM

40S ribosomal protein S14

Chain o

eL42

Chain y

Ribosomal protein S5