J4_6R6G_005
3D structure
- PDB id
- 6R6G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex with SRP.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CGAUAGUCAACAAGUAC*GGAAAGUUGAAAAG*CG*CACUCG
- Length
- 39 nucleotides
- Bulged bases
- 6R6G|1|5|U|348, 6R6G|1|5|A|356, 6R6G|1|8|C|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6R6G|1|5|C|345
6R6G|1|5|G|346
6R6G|1|5|A|347
6R6G|1|5|U|348
6R6G|1|5|A|349
6R6G|1|5|G|350
6R6G|1|5|U|351
6R6G|1|5|C|352
6R6G|1|5|A|353
6R6G|1|5|A|354
6R6G|1|5|C|355
6R6G|1|5|A|356
6R6G|1|5|A|357
6R6G|1|5|G|358
6R6G|1|5|U|359
6R6G|1|5|A|360
6R6G|1|5|C|361
*
6R6G|1|5|G|368
6R6G|1|5|G|369
6R6G|1|5|A|370
6R6G|1|5|A|371
6R6G|1|5|A|372
6R6G|1|5|G|373
6R6G|1|5|U|374
6R6G|1|5|U|375
6R6G|1|5|G|376
6R6G|1|5|A|377
6R6G|1|5|A|378
6R6G|1|5|A|379
6R6G|1|5|A|380
6R6G|1|5|G|381
*
6R6G|1|5|C|408
6R6G|1|5|G|409
*
6R6G|1|8|C|19
6R6G|1|8|A|20
6R6G|1|8|C|21
6R6G|1|8|U|22
6R6G|1|8|C|23
6R6G|1|8|G|24
Current chains
- Chain 5
- 28S ribosomal RNA
- Chain 8
- 5.8S ribosomal RNA
Nearby chains
- Chain 1
- X-box-binding protein 1
- Chain C
- uL4
- Chain Y
- Ribosomal protein L26
- Chain j
- Ribosomal protein L37
- Chain l
- eL39
Coloring options: