J4_6R6G_006

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGAUAGUCAACAAGUAC*GGAAAGUUGAAAAGAAC*GAGUUCAAGAGGGCG*CACUCG

Length

55 nucleotides

Bulged bases

6R6G|1|5|U|348, 6R6G|1|5|A|356, 6R6G|1|5|G|403, 6R6G|1|5|G|407, 6R6G|1|8|C|23

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6R6G|1|5|C|345
6R6G|1|5|G|346
6R6G|1|5|A|347
6R6G|1|5|U|348
6R6G|1|5|A|349
6R6G|1|5|G|350
6R6G|1|5|U|351
6R6G|1|5|C|352
6R6G|1|5|A|353
6R6G|1|5|A|354
6R6G|1|5|C|355
6R6G|1|5|A|356
6R6G|1|5|A|357
6R6G|1|5|G|358
6R6G|1|5|U|359
6R6G|1|5|A|360
6R6G|1|5|C|361
*
6R6G|1|5|G|368
6R6G|1|5|G|369
6R6G|1|5|A|370
6R6G|1|5|A|371
6R6G|1|5|A|372
6R6G|1|5|G|373
6R6G|1|5|U|374
6R6G|1|5|U|375
6R6G|1|5|G|376
6R6G|1|5|A|377
6R6G|1|5|A|378
6R6G|1|5|A|379
6R6G|1|5|A|380
6R6G|1|5|G|381
6R6G|1|5|A|382
6R6G|1|5|A|383
6R6G|1|5|C|384
*
6R6G|1|5|G|395
6R6G|1|5|A|396
6R6G|1|5|G|397
6R6G|1|5|U|398
6R6G|1|5|U|399
6R6G|1|5|C|400
6R6G|1|5|A|401
6R6G|1|5|A|402
6R6G|1|5|G|403
6R6G|1|5|A|404
6R6G|1|5|G|405
6R6G|1|5|G|406
6R6G|1|5|G|407
6R6G|1|5|C|408
6R6G|1|5|G|409
*
6R6G|1|8|C|19
6R6G|1|8|A|20
6R6G|1|8|C|21
6R6G|1|8|U|22
6R6G|1|8|C|23
6R6G|1|8|G|24

Current chains

Chain 5

28S ribosomal RNA

Chain 8

5.8S ribosomal RNA

Nearby chains

Chain 1

X-box-binding protein 1

Chain AB

Signal recognition particle 54 kDa protein

Chain C

uL4

Chain P

uL22

Chain Y

Ribosomal protein L26

Chain j

Ribosomal protein L37

Chain l

eL39