3D structure

PDB id
6R6G (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of XBP1u-paused ribosome nascent chain complex with SRP.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
CC*GAGGGAG*UGCGCCGCGCUCU*GAGCGCACGGGG
Length
34 nucleotides
Bulged bases
6R6G|1|5|G|696, 6R6G|1|5|C|710, 6R6G|1|5|C|841
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6R6G|1|5|C|588
6R6G|1|5|C|589
*
6R6G|1|5|G|692
6R6G|1|5|A|693
6R6G|1|5|G|694
6R6G|1|5|G|695
6R6G|1|5|G|696
6R6G|1|5|A|697
6R6G|1|5|G|698
*
6R6G|1|5|U|708
6R6G|1|5|G|709
6R6G|1|5|C|710
6R6G|1|5|G|711
6R6G|1|5|C|712
6R6G|1|5|C|713
6R6G|1|5|G|714
6R6G|1|5|C|715
6R6G|1|5|G|716
6R6G|1|5|C|717
6R6G|1|5|U|718
6R6G|1|5|C|719
6R6G|1|5|U|720
*
6R6G|1|5|G|834
6R6G|1|5|A|835
6R6G|1|5|G|836
6R6G|1|5|C|837
6R6G|1|5|G|838
6R6G|1|5|C|839
6R6G|1|5|A|840
6R6G|1|5|C|841
6R6G|1|5|G|842
6R6G|1|5|G|843
6R6G|1|5|G|844
6R6G|1|5|G|845

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain C
uL4
Chain E
60S ribosomal protein L6
Chain F
uL30
Chain b
eL29
Chain e
eL32

Coloring options:

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