J4_6R6G_007
3D structure
- PDB id
- 6R6G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex with SRP.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CC*GAGGGAG*UGCGCCGCGCUCU*GAGCGCACGGGG
- Length
- 34 nucleotides
- Bulged bases
- 6R6G|1|5|G|696, 6R6G|1|5|C|710, 6R6G|1|5|C|841
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6R6G|1|5|C|588
6R6G|1|5|C|589
*
6R6G|1|5|G|692
6R6G|1|5|A|693
6R6G|1|5|G|694
6R6G|1|5|G|695
6R6G|1|5|G|696
6R6G|1|5|A|697
6R6G|1|5|G|698
*
6R6G|1|5|U|708
6R6G|1|5|G|709
6R6G|1|5|C|710
6R6G|1|5|G|711
6R6G|1|5|C|712
6R6G|1|5|C|713
6R6G|1|5|G|714
6R6G|1|5|C|715
6R6G|1|5|G|716
6R6G|1|5|C|717
6R6G|1|5|U|718
6R6G|1|5|C|719
6R6G|1|5|U|720
*
6R6G|1|5|G|834
6R6G|1|5|A|835
6R6G|1|5|G|836
6R6G|1|5|C|837
6R6G|1|5|G|838
6R6G|1|5|C|839
6R6G|1|5|A|840
6R6G|1|5|C|841
6R6G|1|5|G|842
6R6G|1|5|G|843
6R6G|1|5|G|844
6R6G|1|5|G|845
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain C
- uL4
- Chain E
- 60S ribosomal protein L6
- Chain F
- uL30
- Chain b
- eL29
- Chain e
- eL32
Coloring options: