J4_6R6G_010

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GG*UGUGAA*UGGAAAG*UC

Length

17 nucleotides

Bulged bases

6R6G|1|5|A|2089

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6R6G|1|5|G|2011
6R6G|1|5|G|2012
*
6R6G|1|5|U|2030
6R6G|1|5|G|2031
6R6G|1|5|U|2032
6R6G|1|5|G|2033
6R6G|1|5|A|2034
6R6G|1|5|A|2035
*
6R6G|1|5|U|2085
6R6G|1|5|G|2086
6R6G|1|5|G|2087
6R6G|1|5|A|2088
6R6G|1|5|A|2089
6R6G|1|5|A|2090
6R6G|1|5|G|2091
*
6R6G|1|5|U|2111
6R6G|1|5|C|2112

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain R

60S ribosomal protein L19

Chain U

60S ribosomal protein L22

Chain g

eL34

Chain k

60S ribosomal protein L38