J4_6R6G_012
3D structure
- PDB id
- 6R6G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex with SRP.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 6R6G|1|5|U|2516
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6R6G_012 not in the Motif Atlas
- Homologous match to J4_8C3A_007
- Geometric discrepancy: 0.1351
- The information below is about J4_8C3A_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6R6G|1|5|C|2394
6R6G|1|5|U|2395
6R6G|1|5|G|2396
*
6R6G|1|5|C|2450
6R6G|1|5|G|2451
*
6R6G|1|5|C|2469
6R6G|1|5|U|2470
6R6G|1|5|U|2471
6R6G|1|5|A|2472
6R6G|1|5|A|2473
6R6G|1|5|G|2474
6R6G|1|5|G|2475
6R6G|1|5|U|2476
6R6G|1|5|A|2477
6R6G|1|5|G|2478
*
6R6G|1|5|U|2512
6R6G|1|5|G|2513
6R6G|1|5|A|2514
6R6G|1|5|A|2515
6R6G|1|5|U|2516
6R6G|1|5|G|2517
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 2
- Transfer RNA; tRNA
- Chain A
- uL2
- Chain K
- Small subunit ribosomal RNA; SSU rRNA
- Chain n
- 60s ribosomal protein l41
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