J4_6R6G_013

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUAAG*UUG*CC*GGG

Length

13 nucleotides

Bulged bases

6R6G|1|5|A|2804

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6R6G|1|5|C|2801
6R6G|1|5|U|2802
6R6G|1|5|A|2803
6R6G|1|5|A|2804
6R6G|1|5|G|2805
*
6R6G|1|5|U|2859
6R6G|1|5|U|2860
6R6G|1|5|G|2861
*
6R6G|1|5|C|2888
6R6G|1|5|C|2889
*
6R6G|1|5|G|2898
6R6G|1|5|G|2899
6R6G|1|5|G|2900

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain D

60S ribosomal protein L5

Chain T

eL21

Chain o

eL42