J4_6R6G_017

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUAG*CGU*AAGGUCCUUG*CAUCC

Length

22 nucleotides

Bulged bases

6R6G|1|2|U|8, 6R6G|1|2|U|47, 6R6G|1|2|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6R6G|1|2|G|7
6R6G|1|2|U|8
6R6G|1|2|A|9
6R6G|1|2|G|10
*
6R6G|1|2|C|25
6R6G|1|2|G|26
6R6G|1|2|U|27
*
6R6G|1|2|A|43
6R6G|1|2|A|44
6R6G|1|2|G|45
6R6G|1|2|G|46
6R6G|1|2|U|47
6R6G|1|2|C|48
6R6G|1|2|C|49
6R6G|1|2|U|50
6R6G|1|2|U|51
6R6G|1|2|G|52
*
6R6G|1|2|C|62
6R6G|1|2|A|63
6R6G|1|2|U|64
6R6G|1|2|C|65
6R6G|1|2|C|66

Current chains

Chain 2

P-tRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain I

Ribosomal protein L10 (Predicted)

Chain K

Small subunit ribosomal RNA; SSU rRNA