J4_6R6P_004

3D structure

PDB id

6R6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

6R6P|1|5|C|216, 6R6P|1|5|C|217

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6R6P|1|5|C|196
6R6P|1|5|A|197
6R6P|1|5|A|198
6R6P|1|5|G|199
*
6R6P|1|5|C|215
6R6P|1|5|C|216
6R6P|1|5|C|217
6R6P|1|5|A|218
6R6P|1|5|G|219
6R6P|1|5|C|220
6R6P|1|5|C|221
6R6P|1|5|C|222
*
6R6P|1|5|G|226
6R6P|1|5|A|227
6R6P|1|5|C|228
*
6R6P|1|5|G|240
6R6P|1|5|G|241
6R6P|1|5|U|242
6R6P|1|5|A|243
6R6P|1|5|G|244

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain C

uL4

Chain Y

Ribosomal protein L26