J4_6R6P_005
3D structure
- PDB id
- 6R6P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex (rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UCUC*GCCGG*CCACGCGCGC*GGCGGAGCGA
- Length
- 29 nucleotides
- Bulged bases
- 6R6P|1|5|C|1237, 6R6P|1|5|G|1244, 6R6P|1|5|C|1272, 6R6P|1|5|G|1273
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6R6P|1|5|U|980
6R6P|1|5|C|981
6R6P|1|5|U|982
6R6P|1|5|C|983
*
6R6P|1|5|G|1070
6R6P|1|5|C|1071
6R6P|1|5|C|1072
6R6P|1|5|G|1073
6R6P|1|5|G|1074
*
6R6P|1|5|C|1236
6R6P|1|5|C|1237
6R6P|1|5|A|1238
6R6P|1|5|C|1239
6R6P|1|5|G|1240
6R6P|1|5|C|1241
6R6P|1|5|G|1242
6R6P|1|5|C|1243
6R6P|1|5|G|1244
6R6P|1|5|C|1245
*
6R6P|1|5|G|1265
6R6P|1|5|G|1266
6R6P|1|5|C|1267
6R6P|1|5|G|1268
6R6P|1|5|G|1269
6R6P|1|5|A|1270
6R6P|1|5|G|1271
6R6P|1|5|C|1272
6R6P|1|5|G|1273
6R6P|1|5|A|1274
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain C
- uL4
- Chain E
- 60S ribosomal protein L6
- Chain F
- uL30
Coloring options: