J4_6R6P_009
3D structure
- PDB id
- 6R6P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex (rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GACUG*CAAAG*UGAUU*AUGAAC
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6R6P_009 not in the Motif Atlas
- Homologous match to J4_8P9A_017
- Geometric discrepancy: 0.0924
- The information below is about J4_8P9A_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_78485.1
- Basepair signature
- cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
6R6P|1|5|G|3634
6R6P|1|5|A|3635
6R6P|1|5|C|3636
6R6P|1|5|U|3637
6R6P|1|5|G|3638
*
6R6P|1|5|C|3650
6R6P|1|5|A|3651
6R6P|1|5|A|3652
6R6P|1|5|A|3653
6R6P|1|5|G|3654
*
6R6P|1|5|U|3690
6R6P|1|5|G|3691
6R6P|1|5|A|3692
6R6P|1|5|U|3693
6R6P|1|5|U|3694
*
6R6P|1|5|A|3821
6R6P|1|5|U|3822
6R6P|1|5|G|3823
6R6P|1|5|A|3824
6R6P|1|5|A|3825
6R6P|1|5|C|3826
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain A
- uL2
- Chain K
- Small subunit ribosomal RNA; SSU rRNA
- Chain n
- 60s ribosomal protein l41
- Chain p
- ribosomal protein eL43
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