J4_6R6P_010
3D structure
- PDB id
- 6R6P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex (rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 6R6P|1|5|U|3818
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6R6P_010 not in the Motif Atlas
- Homologous match to J4_8P9A_018
- Geometric discrepancy: 0.2195
- The information below is about J4_8P9A_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_42306.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 5
Unit IDs
6R6P|1|5|C|3696
6R6P|1|5|U|3697
6R6P|1|5|G|3698
*
6R6P|1|5|C|3752
6R6P|1|5|G|3753
*
6R6P|1|5|C|3771
6R6P|1|5|U|3772
6R6P|1|5|U|3773
6R6P|1|5|A|3774
6R6P|1|5|A|3775
6R6P|1|5|G|3776
6R6P|1|5|G|3777
6R6P|1|5|U|3778
6R6P|1|5|A|3779
6R6P|1|5|G|3780
*
6R6P|1|5|U|3814
6R6P|1|5|G|3815
6R6P|1|5|A|3816
6R6P|1|5|A|3817
6R6P|1|5|U|3818
6R6P|1|5|G|3819
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 3
- Transfer RNA; tRNA
- Chain A
- uL2
- Chain K
- Small subunit ribosomal RNA; SSU rRNA
- Chain n
- 60s ribosomal protein l41
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