J4_6R7Q_002
3D structure
- PDB id
- 6R7Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex with Sec61.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AUAG*CAU*AGGGUCC*GU
- Length
- 16 nucleotides
- Bulged bases
- 6R7Q|1|3|U|8, 6R7Q|1|3|U|47, 6R7Q|1|3|C|48
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6R7Q_002 not in the Motif Atlas
- Homologous match to J4_7EQJ_002
- Geometric discrepancy: 0.172
- The information below is about J4_7EQJ_002
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_58311.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 30
Unit IDs
6R7Q|1|3|A|7
6R7Q|1|3|U|8
6R7Q|1|3|A|9
6R7Q|1|3|G|10
*
6R7Q|1|3|C|25
6R7Q|1|3|A|26
6R7Q|1|3|U|27
*
6R7Q|1|3|A|43
6R7Q|1|3|G|44
6R7Q|1|3|G|45
6R7Q|1|3|G|46
6R7Q|1|3|U|47
6R7Q|1|3|C|48
6R7Q|1|3|C|49
*
6R7Q|1|3|G|65
6R7Q|1|3|U|66
Current chains
- Chain 3
- E-tRNA
Nearby chains
- Chain o
- eL42
- Chain y
- Ribosomal protein S5
Coloring options: