J4_6R7Q_004
3D structure
- PDB id
- 6R7Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex with Sec61.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CAAG*CCCAGCCC*GAC*GGUAG
- Length
- 20 nucleotides
- Bulged bases
- 6R7Q|1|5|C|216, 6R7Q|1|5|C|217, 6R7Q|1|5|A|218, 6R7Q|1|5|G|219
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6R7Q|1|5|C|196
6R7Q|1|5|A|197
6R7Q|1|5|A|198
6R7Q|1|5|G|199
*
6R7Q|1|5|C|215
6R7Q|1|5|C|216
6R7Q|1|5|C|217
6R7Q|1|5|A|218
6R7Q|1|5|G|219
6R7Q|1|5|C|220
6R7Q|1|5|C|221
6R7Q|1|5|C|222
*
6R7Q|1|5|G|226
6R7Q|1|5|A|227
6R7Q|1|5|C|228
*
6R7Q|1|5|G|240
6R7Q|1|5|G|241
6R7Q|1|5|U|242
6R7Q|1|5|A|243
6R7Q|1|5|G|244
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain C
- uL4
- Chain Y
- Ribosomal protein L26
Coloring options: