J4_6R84_006
3D structure
- PDB id
- 6R84 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state with Arb1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GACUG*CAUAG*UGAUU*AUUAAC
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6R84_006 not in the Motif Atlas
- Homologous match to J4_8P9A_017
- Geometric discrepancy: 0.0847
- The information below is about J4_8P9A_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_78485.1
- Basepair signature
- cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
6R84|1|1|G|2130
6R84|1|1|A|2131
6R84|1|1|C|2132
6R84|1|1|U|2133
6R84|1|1|G|2134
*
6R84|1|1|C|2146
6R84|1|1|A|2147
6R84|1|1|U|2148
6R84|1|1|A|2149
6R84|1|1|G|2150
*
6R84|1|1|U|2186
6R84|1|1|G|2187
6R84|1|1|A|2188
6R84|1|1|U|2189
6R84|1|1|U|2190
*
6R84|1|1|A|2317
6R84|1|1|U|2318
6R84|1|1|U|2319
6R84|1|1|A|2320
6R84|1|1|A|2321
6R84|1|1|C|2322
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain D
- 60S ribosomal protein L43-A
- Chain E
- 60S ribosomal protein L2-A
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