J4_6R84_007
3D structure
- PDB id
- 6R84 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state with Arb1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAGCCAAAUGCCUCG*CGCGCAUGAAUG
- Length
- 39 nucleotides
- Bulged bases
- 6R84|1|1|U|2269, 6R84|1|1|A|2281, 6R84|1|1|C|2287, 6R84|1|1|C|2306, 6R84|1|1|U|2314
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6R84|1|1|C|2192
6R84|1|1|U|2193
6R84|1|1|G|2194
*
6R84|1|1|C|2248
6R84|1|1|G|2249
*
6R84|1|1|C|2267
6R84|1|1|U|2268
6R84|1|1|U|2269
6R84|1|1|A|2270
6R84|1|1|A|2271
6R84|1|1|G|2272
6R84|1|1|G|2273
6R84|1|1|U|2274
6R84|1|1|A|2275
6R84|1|1|G|2276
6R84|1|1|C|2277
6R84|1|1|C|2278
6R84|1|1|A|2279
6R84|1|1|A|2280
6R84|1|1|A|2281
6R84|1|1|U|2282
6R84|1|1|G|2283
6R84|1|1|C|2284
6R84|1|1|C|2285
6R84|1|1|U|2286
6R84|1|1|C|2287
6R84|1|1|G|2288
*
6R84|1|1|C|2304
6R84|1|1|G|2305
6R84|1|1|C|2306
6R84|1|1|G|2307
6R84|1|1|C|2308
6R84|1|1|A|2309
6R84|1|1|U|2310
6R84|1|1|G|2311
6R84|1|1|A|2312
6R84|1|1|A|2313
6R84|1|1|U|2314
6R84|1|1|G|2315
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain A
- ABC transporter ATP-binding protein ARB1
- Chain B
- Transfer RNA; tRNA
- Chain E
- 60S ribosomal protein L2-A
- Chain R
- Protein VMS1,Vms1,Protein VMS1,Vms1
Coloring options: