J4_6R84_011

3D structure

PDB id

6R84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state with Arb1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUAAGG*CUUGAU*ACC*GUG

Length

18 nucleotides

Bulged bases

6R84|1|1|A|2657

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6R84|1|1|C|2654
6R84|1|1|U|2655
6R84|1|1|A|2656
6R84|1|1|A|2657
6R84|1|1|G|2658
6R84|1|1|G|2659
*
6R84|1|1|C|2711
6R84|1|1|U|2712
6R84|1|1|U|2713
6R84|1|1|G|2714
6R84|1|1|A|2715
6R84|1|1|U|2716
*
6R84|1|1|A|2740
6R84|1|1|C|2741
6R84|1|1|C|2742
*
6R84|1|1|G|2751
6R84|1|1|U|2752
6R84|1|1|G|2753

Current chains

Chain 1

25S rRNA

Nearby chains

Chain C

60S ribosomal protein L42-A

Chain H

60S ribosomal protein L5

Chain V

60S ribosomal protein L21-A

Chain d

60S ribosomal protein L29