J4_6R87_007

3D structure

PDB id

6R87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

6R87|1|1|U|2314

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6R87_007 not in the Motif Atlas

Homologous match to J4_8P9A_018

Geometric discrepancy: 0.1526

The information below is about J4_8P9A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

6R87|1|1|C|2192
6R87|1|1|U|2193
6R87|1|1|G|2194
*
6R87|1|1|C|2248
6R87|1|1|G|2249
*
6R87|1|1|C|2267
6R87|1|1|U|2268
6R87|1|1|U|2269
6R87|1|1|A|2270
6R87|1|1|A|2271
6R87|1|1|G|2272
6R87|1|1|G|2273
6R87|1|1|U|2274
6R87|1|1|A|2275
6R87|1|1|G|2276
*
6R87|1|1|U|2310
6R87|1|1|G|2311
6R87|1|1|A|2312
6R87|1|1|A|2313
6R87|1|1|U|2314
6R87|1|1|G|2315

Current chains

Chain 1

25S rRNA

Nearby chains

Chain E

60S ribosomal protein L2-A