J4_6RFL_001
3D structure
- PDB id
- 6RFL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the complete Vaccinia DNA-dependent RNA polymerase complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.76 Å
Loop
- Sequence
- AUGG*CUC*GCGAUC*GU
- Length
- 15 nucleotides
- Bulged bases
- 6RFL|1|U|U|8, 6RFL|1|U|U|47
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6RFL_001 not in the Motif Atlas
- Homologous match to J4_5HR6_001
- Geometric discrepancy: 0.2204
- The information below is about J4_5HR6_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 48
Unit IDs
6RFL|1|U|A|7
6RFL|1|U|U|8
6RFL|1|U|G|9
6RFL|1|U|G|10
*
6RFL|1|U|C|25
6RFL|1|U|U|26
6RFL|1|U|C|27
*
6RFL|1|U|G|43
6RFL|1|U|C|44
6RFL|1|U|G|45
6RFL|1|U|A|46
6RFL|1|U|U|47
6RFL|1|U|C|48
*
6RFL|1|U|G|64
6RFL|1|U|U|65
Current chains
- Chain U
- chr17.trna16-GlnTTG
Nearby chains
- Chain I
- Putative H4L RNA polymerase-associated transcription factor RAP94
- Chain K
- Transcription factor VETF 82kDa large subunit
- Chain Y
- Nucleoside triphosphate phosphohydrolase-I
Coloring options: