J4_6RM3_006

3D structure

PDB id

6RM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Evolutionary compaction and adaptation visualized by the structure of the dormant microsporidian ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

6RM3|1|L50|U|1673

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6RM3_006 not in the Motif Atlas

Homologous match to J4_8C3A_007

Geometric discrepancy: 0.1453

The information below is about J4_8C3A_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6RM3|1|L50|C|1560
6RM3|1|L50|U|1561
6RM3|1|L50|G|1562
*
6RM3|1|L50|C|1607
6RM3|1|L50|G|1608
*
6RM3|1|L50|C|1626
6RM3|1|L50|U|1627
6RM3|1|L50|U|1628
6RM3|1|L50|A|1629
6RM3|1|L50|A|1630
6RM3|1|L50|G|1631
6RM3|1|L50|G|1632
6RM3|1|L50|U|1633
6RM3|1|L50|A|1634
6RM3|1|L50|G|1635
*
6RM3|1|L50|U|1669
6RM3|1|L50|G|1670
6RM3|1|L50|A|1671
6RM3|1|L50|A|1672
6RM3|1|L50|U|1673
6RM3|1|L50|G|1674

Current chains

Chain L50

23S rRNA

Nearby chains

Chain LA0

uL2

Chain LNN

MDF2

Chain S60

Small subunit ribosomal RNA; SSU rRNA