J4_6RM3_007

3D structure

PDB id

6RM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Evolutionary compaction and adaptation visualized by the structure of the dormant microsporidian ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUAAG*UUUAC*GUA*UUG

Length

16 nucleotides

Bulged bases

6RM3|1|L50|A|1932, 6RM3|1|L50|U|2026

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6RM3_007 not in the Motif Atlas

Homologous match to J4_8C3A_008

Geometric discrepancy: 0.2299

The information below is about J4_8C3A_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6RM3|1|L50|C|1929
6RM3|1|L50|U|1930
6RM3|1|L50|A|1931
6RM3|1|L50|A|1932
6RM3|1|L50|G|1933
*
6RM3|1|L50|U|1987
6RM3|1|L50|U|1988
6RM3|1|L50|U|1989
6RM3|1|L50|A|1990
6RM3|1|L50|C|1991
*
6RM3|1|L50|G|2014
6RM3|1|L50|U|2015
6RM3|1|L50|A|2016
*
6RM3|1|L50|U|2025
6RM3|1|L50|U|2026
6RM3|1|L50|G|2027

Current chains

Chain L50

23S rRNA

Nearby chains

Chain LD0

uL18

Chain LOO

eL42

Chain LT0

eL21