J4_6RZZ_009
3D structure
- PDB id
- 6RZZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CUAAG*UUGAU*ACC*GUG
- Length
- 16 nucleotides
- Bulged bases
- 6RZZ|1|A|A|2657
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6RZZ_009 not in the Motif Atlas
- Homologous match to J4_8C3A_008
- Geometric discrepancy: 0.1172
- The information below is about J4_8C3A_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6RZZ|1|A|C|2654
6RZZ|1|A|U|2655
6RZZ|1|A|A|2656
6RZZ|1|A|A|2657
6RZZ|1|A|G|2658
*
6RZZ|1|A|U|2712
6RZZ|1|A|U|2713
6RZZ|1|A|G|2714
6RZZ|1|A|A|2715
6RZZ|1|A|U|2716
*
6RZZ|1|A|A|2740
6RZZ|1|A|C|2741
6RZZ|1|A|C|2742
*
6RZZ|1|A|G|2751
6RZZ|1|A|U|2752
6RZZ|1|A|G|2753
Current chains
- Chain A
- 25S ribosomal RNA
Nearby chains
- Chain P
- 60S ribosomal protein L5
- Chain T
- 60S ribosomal protein L21-A
- Chain a
- 60S ribosomal protein L29
- Chain l
- 60S ribosomal protein L42-A
- Chain w
- 60S ribosomal export protein NMD3
Coloring options: