3D structure

PDB id
6S0K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Ribosome nascent chain in complex with SecA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GGAAG*CGCG*CAG*CGUAC
Length
17 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6S0K_002 not in the Motif Atlas
Homologous match to J4_5J7L_019
Geometric discrepancy: 0.0731
The information below is about J4_5J7L_019
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_71729.5
Basepair signature
cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
Number of instances in this motif group
4

Unit IDs

6S0K|1|A|G|297
6S0K|1|A|G|298
6S0K|1|A|A|299
6S0K|1|A|A|300
6S0K|1|A|G|301
*
6S0K|1|A|C|316
6S0K|1|A|G|317
6S0K|1|A|C|318
6S0K|1|A|G|319
*
6S0K|1|A|C|323
6S0K|1|A|A|324
6S0K|1|A|G|325
*
6S0K|1|A|C|337
6S0K|1|A|G|338
6S0K|1|A|U|339
6S0K|1|A|A|340
6S0K|1|A|C|341

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain E
50S ribosomal protein L4
Chain V
50S ribosomal protein L24

Coloring options:


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