J4_6S0K_002

3D structure

PDB id

6S0K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome nascent chain in complex with SecA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6S0K_002 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0731

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

6S0K|1|A|G|297
6S0K|1|A|G|298
6S0K|1|A|A|299
6S0K|1|A|A|300
6S0K|1|A|G|301
*
6S0K|1|A|C|316
6S0K|1|A|G|317
6S0K|1|A|C|318
6S0K|1|A|G|319
*
6S0K|1|A|C|323
6S0K|1|A|A|324
6S0K|1|A|G|325
*
6S0K|1|A|C|337
6S0K|1|A|G|338
6S0K|1|A|U|339
6S0K|1|A|A|340
6S0K|1|A|C|341

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain V

50S ribosomal protein L24