J4_6S47_007

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

6S47|1|AA|U|2314

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6S47_007 not in the Motif Atlas

Homologous match to J4_8C3A_007

Geometric discrepancy: 0.07

The information below is about J4_8C3A_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6S47|1|AA|C|2192
6S47|1|AA|U|2193
6S47|1|AA|G|2194
*
6S47|1|AA|C|2248
6S47|1|AA|G|2249
*
6S47|1|AA|C|2267
6S47|1|AA|U|2268
6S47|1|AA|U|2269
6S47|1|AA|A|2270
6S47|1|AA|A|2271
6S47|1|AA|G|2272
6S47|1|AA|G|2273
6S47|1|AA|U|2274
6S47|1|AA|A|2275
6S47|1|AA|G|2276
*
6S47|1|AA|U|2310
6S47|1|AA|G|2311
6S47|1|AA|A|2312
6S47|1|AA|A|2313
6S47|1|AA|U|2314
6S47|1|AA|G|2315

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AD

60S ribosomal protein L2-A

Chain Ap

60S ribosomal protein L41-B

Chain BA

Small subunit ribosomal RNA; SSU rRNA