J4_6SKG_001

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CAGUAACAC*GGC*GUAC*GG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SKG|1|Aa|C|94
6SKG|1|Aa|A|95
6SKG|1|Aa|G|96
6SKG|1|Aa|U|97
6SKG|1|Aa|A|98
6SKG|1|Aa|A|99
6SKG|1|Aa|C|100
6SKG|1|Aa|A|101
6SKG|1|Aa|C|102
*
6SKG|1|Aa|G|226
6SKG|1|Aa|G|227
6SKG|1|Aa|C|228
*
6SKG|1|Aa|G|274
6SKG|1|Aa|U|275
6SKG|1|Aa|A|276
6SKG|1|Aa|C|277
*
6SKG|1|Aa|G|299
6SKG|1|Aa|G|300

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Af

30S ribosomal protein S4e

Chain Ak

30S ribosomal protein S8e

Chain Ao

30S ribosomal protein S12

Chain As

30S ribosomal protein S17