J4_6SKG_002

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GAG*CAUAG*CGAAAGG*CGC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SKG|1|Aa|G|122
6SKG|1|Aa|A|123
6SKG|1|Aa|G|124
*
6SKG|1|Aa|C|158
6SKG|1|Aa|A|159
6SKG|1|Aa|U|160
6SKG|1|Aa|A|161
6SKG|1|Aa|G|162
*
6SKG|1|Aa|C|190
6SKG|1|Aa|G|191
6SKG|1|Aa|A|192
6SKG|1|Aa|A|193
6SKG|1|Aa|A|194
6SKG|1|Aa|G|195
6SKG|1|Aa|G|196
*
6SKG|1|Aa|C|207
6SKG|1|Aa|G|208
6SKG|1|Aa|C|209

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Af

30S ribosomal protein S4e

Chain Ak

30S ribosomal protein S8e