J4_6SKG_009

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

AC*GC*GG*UU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6SKG_009 not in the Motif Atlas

Homologous match to J4_4V9F_006

Geometric discrepancy: 0.4281

The information below is about J4_4V9F_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_75575.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6SKG|1|BA|A|1598
6SKG|1|BA|C|1599
*
6SKG|1|BA|G|1615
6SKG|1|BA|C|1616
*
6SKG|1|BA|G|1673
6SKG|1|BA|G|1674
*
6SKG|1|BA|U|1691
6SKG|1|BA|U|1692

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BS

50S ribosomal protein L19e

Chain Be

50S ribosomal protein L34e