J4_6SKG_010

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GACUG*CACAG*C(OMG)AC*GUA(A2M)C

Length

19 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SKG|1|BA|G|1900
6SKG|1|BA|A|1901
6SKG|1|BA|C|1902
6SKG|1|BA|U|1903
6SKG|1|BA|G|1904
*
6SKG|1|BA|C|1916
6SKG|1|BA|A|1917
6SKG|1|BA|C|1918
6SKG|1|BA|A|1919
6SKG|1|BA|G|1920
*
6SKG|1|BA|C|1955
6SKG|1|BA|OMG|1956
6SKG|1|BA|A|1957
6SKG|1|BA|C|1958
*
6SKG|1|BA|G|2088
6SKG|1|BA|U|2089
6SKG|1|BA|A|2090
6SKG|1|BA|A2M|2091
6SKG|1|BA|C|2092

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain Aa

Small subunit ribosomal RNA; SSU rRNA

Chain BC

50S ribosomal protein L2

Chain Bg

50S ribosomal protein L37Ae

Chain Bk

LSU ribosomal protein L41E