J4_6SKG_013

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

C(OMU)AAG*CUGAC*GCC*GUG

Length

16 nucleotides

Bulged bases

6SKG|1|BA|A|2391

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SKG|1|BA|C|2388
6SKG|1|BA|OMU|2389
6SKG|1|BA|A|2390
6SKG|1|BA|A|2391
6SKG|1|BA|G|2392
*
6SKG|1|BA|C|2446
6SKG|1|BA|U|2447
6SKG|1|BA|G|2448
6SKG|1|BA|A|2449
6SKG|1|BA|C|2450
*
6SKG|1|BA|G|2476
6SKG|1|BA|C|2477
6SKG|1|BA|C|2478
*
6SKG|1|BA|G|2487
6SKG|1|BA|U|2488
6SKG|1|BA|G|2489

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BQ

50S ribosomal protein L18

Chain BU

50S ribosomal protein L21e

Chain Bl

50S ribosomal protein L44e