J4_6SKG_015

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CUG*CG*UUAAGGUAG(OMC)*GCAUGAAUG

Length

24 nucleotides

Bulged bases

6SKG|1|BA|U|2084

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SKG|1|BA|C|1961
6SKG|1|BA|U|1962
6SKG|1|BA|G|1963
*
6SKG|1|BA|C|2018
6SKG|1|BA|G|2019
*
6SKG|1|BA|U|2038
6SKG|1|BA|U|2039
6SKG|1|BA|A|2040
6SKG|1|BA|A|2041
6SKG|1|BA|G|2042
6SKG|1|BA|G|2043
6SKG|1|BA|U|2044
6SKG|1|BA|A|2045
6SKG|1|BA|G|2046
6SKG|1|BA|OMC|2047
*
6SKG|1|BA|G|2077
6SKG|1|BA|C|2078
6SKG|1|BA|A|2079
6SKG|1|BA|U|2080
6SKG|1|BA|G|2081
6SKG|1|BA|A|2082
6SKG|1|BA|A|2083
6SKG|1|BA|U|2084
6SKG|1|BA|G|2085

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain Aa

Small subunit ribosomal RNA; SSU rRNA

Chain BC

50S ribosomal protein L2

Chain Bk

LSU ribosomal protein L41E

Chain Bp

Predicted exosome subunit, UPF0023 family