J4_6SNT_005

3D structure

PDB id

6SNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome stalled on SDD1 mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GG*CU*AG*UC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6SNT_005 not in the Motif Atlas

Homologous match to J4_8P9A_016

Geometric discrepancy: 0.1048

The information below is about J4_8P9A_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_75575.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6SNT|1|1|G|1674
6SNT|1|1|G|1675
*
6SNT|1|1|C|1693
6SNT|1|1|U|1694
*
6SNT|1|1|A|1752
6SNT|1|1|G|1753
*
6SNT|1|1|U|1772
6SNT|1|1|C|1773

Current chains

Chain 1

Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNA

Nearby chains

Chain af

60S ribosomal protein L38

Chain aj

60S ribosomal protein L34-A

Chain au

60S ribosomal protein L22-A