J4_6SNT_007
3D structure
- PDB id
- 6SNT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome stalled on SDD1 mRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 6SNT|1|1|U|2314
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6SNT_007 not in the Motif Atlas
- Homologous match to J4_8C3A_007
- Geometric discrepancy: 0.0778
- The information below is about J4_8C3A_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6SNT|1|1|C|2192
6SNT|1|1|U|2193
6SNT|1|1|G|2194
*
6SNT|1|1|C|2248
6SNT|1|1|G|2249
*
6SNT|1|1|C|2267
6SNT|1|1|U|2268
6SNT|1|1|U|2269
6SNT|1|1|A|2270
6SNT|1|1|A|2271
6SNT|1|1|G|2272
6SNT|1|1|G|2273
6SNT|1|1|U|2274
6SNT|1|1|A|2275
6SNT|1|1|G|2276
*
6SNT|1|1|U|2310
6SNT|1|1|G|2311
6SNT|1|1|A|2312
6SNT|1|1|A|2313
6SNT|1|1|U|2314
6SNT|1|1|G|2315
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain 6
- Transfer RNA; tRNA
- Chain ac
- L41-A
- Chain h
- 60S ribosomal protein L2-A
Coloring options: