3D structure

PDB id
6SNT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome stalled on SDD1 mRNA.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
GUGG*CGU*AAGAUUC*GC
Length
16 nucleotides
Bulged bases
6SNT|1|6|U|8, 6SNT|1|6|U|47, 6SNT|1|6|U|48
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6SNT_012 not in the Motif Atlas
Homologous match to J4_3TUP_001
Geometric discrepancy: 0.2014
The information below is about J4_3TUP_001
Detailed Annotation
tRNA junction
Broad Annotation
No text annotation
Motif group
J4_58311.1
Basepair signature
cWW-F-cWW-cWW-cHS-F-cWW-cWW
Number of instances in this motif group
30

Unit IDs

6SNT|1|6|G|7
6SNT|1|6|U|8
6SNT|1|6|G|9
6SNT|1|6|G|10
*
6SNT|1|6|C|25
6SNT|1|6|G|26
6SNT|1|6|U|27
*
6SNT|1|6|A|43
6SNT|1|6|A|44
6SNT|1|6|G|45
6SNT|1|6|A|46
6SNT|1|6|U|47
6SNT|1|6|U|48
6SNT|1|6|C|49
*
6SNT|1|6|G|65
6SNT|1|6|C|66

Current chains

Chain 6
tRNA

Nearby chains

Chain 1
Large subunit ribosomal RNA; LSU rRNA
Chain Z
40S ribosomal protein S25-A
Chain p
60S ribosomal protein L10

Coloring options:


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