J4_6SNT_012
3D structure
- PDB id
- 6SNT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome stalled on SDD1 mRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GUGG*CGU*AAGAUUC*GC
- Length
- 16 nucleotides
- Bulged bases
- 6SNT|1|6|U|8, 6SNT|1|6|U|47, 6SNT|1|6|U|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6SNT_012 not in the Motif Atlas
- Homologous match to J4_3TUP_001
- Geometric discrepancy: 0.2014
- The information below is about J4_3TUP_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_58311.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 30
Unit IDs
6SNT|1|6|G|7
6SNT|1|6|U|8
6SNT|1|6|G|9
6SNT|1|6|G|10
*
6SNT|1|6|C|25
6SNT|1|6|G|26
6SNT|1|6|U|27
*
6SNT|1|6|A|43
6SNT|1|6|A|44
6SNT|1|6|G|45
6SNT|1|6|A|46
6SNT|1|6|U|47
6SNT|1|6|U|48
6SNT|1|6|C|49
*
6SNT|1|6|G|65
6SNT|1|6|C|66
Current chains
- Chain 6
- tRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain Z
- 40S ribosomal protein S25-A
- Chain p
- 60S ribosomal protein L10
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