J4_6SPB_001

3D structure

PDB id

6SPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 50s ribosome from a clinical isolate with a mutation in uL6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CCUUAAG*UGAAAUCAAGUAG*UGAACAUGG*CCAAG

Length

34 nucleotides

Bulged bases

6SPB|1|A|U|270, 6SPB|1|A|U|396

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SPB|1|A|C|268
6SPB|1|A|C|269
6SPB|1|A|U|270
6SPB|1|A|U|271
6SPB|1|A|A|272
6SPB|1|A|A|273
6SPB|1|A|G|274
*
6SPB|1|A|U|354
6SPB|1|A|G|355
6SPB|1|A|A|356
6SPB|1|A|A|357
6SPB|1|A|A|358
6SPB|1|A|U|359
6SPB|1|A|C|360
6SPB|1|A|A|361
6SPB|1|A|A|362
6SPB|1|A|G|363
6SPB|1|A|U|364
6SPB|1|A|A|365
6SPB|1|A|G|366
*
6SPB|1|A|U|390
6SPB|1|A|G|391
6SPB|1|A|A|392
6SPB|1|A|A|393
6SPB|1|A|C|394
6SPB|1|A|A|395
6SPB|1|A|U|396
6SPB|1|A|G|397
6SPB|1|A|G|398
*
6SPB|1|A|C|411
6SPB|1|A|C|412
6SPB|1|A|A|413
6SPB|1|A|A|414
6SPB|1|A|G|415

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain X

50S ribosomal protein L28